msmbuilder.tpt.calculate_mfpt¶

msmbuilder.tpt.calculate_mfpt(sinks, tprob, lag_time=1.0)[source]¶

Gets the Mean First Passage Time (MFPT) for all states to a set of sinks.

Parameters:

sinks : array, int

indices of the sink states

tprob : matrix

transition probability matrix

LagTime : float

the lag time used to create T (dictates units of the answer)

Returns:

MFPT : array, float

MFPT in time units of LagTime, for each state (in order of state index)