Lumping: msmbuilder.lumping¶
Lumping, or coarse-graining, refers to the processing of creating a few-state model from a many-state model (lumping states together) in such a way that the lumped model can capture the long timescale dynamics (i.e. joining together states which interconvert rapidly)
Core Lumping Routines¶
PCCA | |
pcca_plus |
Private PCCA+ Implementation Code¶
has_constraint_violation | |
fill_A | |
index_search | |
get_maps | |
objective | |
to_square | |
to_flat |
Helper Functions¶
NormalizeLeftEigenvectors | |
trim_eigenvectors_by_flux |