msmbuilder.msm_analysis.get_implied_timescales¶
- msmbuilder.msm_analysis.get_implied_timescales(assignments_fn, lag_times, n_implied_times=100, sliding_window=True, trimming=True, symmetrize=None, n_procs=1)[source]¶
Calculate implied timescales in parallel using multiprocessing library. Does not work in interactive mode.
Parameters: AssignmentsFn : str
Path to Assignments.h5 file on disk
LagTimes : list
List of lag times to calculate the timescales at
NumImpledTimes : int, optional
Number of implied timescales to calculate at each lag time
Slide : bool, optional
Use sliding window
Trim : bool, optional
Use ergodic trimming
Symmetrize : {‘MLE’, ‘Transpose’, None}
Symmetrization method
nProc : int
number of processes to use in parallel (multiprocessing
Returns: formatedLags : ndarray
RTM 6/27 I’m not quite sure what the semantics of the output is. It’s not trivial and undocummented.