msmbuilder.metrics.ContinuousContact.prepare_trajectory¶
- ContinuousContact.prepare_trajectory(trajectory)¶
Prepare a trajectory for distance calculations based on the contact map.
Each frame in the trajectory will be represented by a vector where each entries represents the distance between two residues in the structure. Depending on what contacts you pick to use, this can be a ‘native biased’ picture or not.
Returns: pairwise_distances : ndarray
1D array of various residue-residue distances