msmbuilder.metrics.BooleanContact.all_pairwise¶
- BooleanContact.all_pairwise(prepared_traj)¶
Calculate a condense” distance matrix of all the pairwise distances between each frame with each other frame in prepared_traj
The condensed distance matrix can be converted to the redundant square form if desired
Parameters: prepared_traj1 : ndarray
Prepared trajectory
Returns: distances : ndarray
1D vector of length len(pairwise_traj) choose 2 where the i*jth entry contains the distance between prepared_traj[i] and prepared_traj[j]