msmbuilder.metrics.AtomPairs.all_to_all¶
- AtomPairs.all_to_all(prepared_traj1, prepared_traj2)¶
Get a matrix of distances from all frames in one traj to all frames in another
Parameters: prepared_traj1 : ndarray
First prepared trajectory
prepared_traj2 : ndarray
Second prepared trajectory
Returns: distances : ndarray
A 2D array of shape len(preprared_traj1) * len(preprared_traj2)